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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103055118_103055439_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103055118 - 103055439
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATCT
Flanking Amino Acid:
KMVILAVCSQMLSEPERGSL
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.7
0.92
0.7
88.8
28
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
58.6
0.35
2
80.3
41.9

Associated Gene:

Gene:
RMC1
Ensembl Gene ID:
ENSAPLG00000006991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021022
103052032 - 103067349
15318
ENSAPLT00000007274
103051456 - 103067349
15894