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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103056458_103056851_R

Intron Information:

Intron Rank:
11
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
103056458 - 103056851
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTTTAACATTTAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGAACTTTAACA
Flanking Amino Acid:
TSQSPVPCKLYSSSWIVFQP
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
70.5
0.46
0.9
67.8
37.9
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
71.6
0.68
1.3
74.07
37.1

Associated Gene:

Gene:
RMC1
Ensembl Gene ID:
ENSAPLG00000006991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007274
103051456 - 103067349
15894
ENSAPLT00000021022
103052032 - 103067349
15318