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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103064353_103065471_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103064353 - 103065471
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TCTTCCTATATA
Flanking Amino Acid:
GLEDRNPISFRMEDKGEVKC
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
77.7
0.62
0.8
73.3
30.6
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
56.7
0.2
2
70.72
41.9

Associated Gene:

Gene:
RMC1
Ensembl Gene ID:
ENSAPLG00000006991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021022
103052032 - 103067349
15318
ENSAPLT00000007274
103051456 - 103067349
15894