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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103073496_103073908_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103073496 - 103073908
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTTTCTTAATC
Flanking Amino Acid:
WAEKEMHNLTRMQNAGIPCP
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.4
0.73
0.8
76.6
36.5
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
80.7
0.94
1
81.43
33.4

Associated Gene:

Gene:
RIOK3
Ensembl Gene ID:
ENSAPLG00000006497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006773
103069939 - 103079188
9250