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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103076152_103076875_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103076152 - 103076875
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTCCTCATAG
Flanking Amino Acid:
GRKNTARMENFAPGFQVGDG
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.2
0.7
0.7
76.8
25.3
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
49.6
-0.1
2
60.97
46.4

Associated Gene:

Gene:
RIOK3
Ensembl Gene ID:
ENSAPLG00000006497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006773
103069939 - 103079188
9250