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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103077557_103077675_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103077557 - 103077675
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
ACATGCTTATTT
Flanking Amino Acid:
EEKKFNGDSKVSISFENYRK
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
80.1
0.68
1
79.5
32.8
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
49.6
0.05
2
66.75
44.4

Associated Gene:

Gene:
RIOK3
Ensembl Gene ID:
ENSAPLG00000006497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006773
103069939 - 103079188
9250