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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103077822_103078353_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103077822 - 103078353
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TCATTTTATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTCATTT
Flanking Amino Acid:
EENAAFPEVVAVAEGPFITG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
75
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
76.8
0.6
0.9
73.1
36.2
Minor 5ss
44.7
-0.6
2.8
53.7
43.8
Minor BPS
52.6
0.16
1.7
73.71
37.9

Associated Gene:

Gene:
RIOK3
Ensembl Gene ID:
ENSAPLG00000006497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006773
103069939 - 103079188
9250