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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103093989_103097640_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103093989 - 103097640
Intron Length:
3652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGATATAA
5'SS Class:
major
3'SS Sequence:
TTCTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTACTTAAAT
Flanking Amino Acid:
LLIGVFKAPPFDPNGYFWAL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
63.2
32.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
85.1
28
Minor 5ss
32.4
-2
3
39.1
46.2
Minor BPS
74.2
0.84
1.5
89.33
34.1

Associated Gene:

Gene:
TMEM241
Ensembl Gene ID:
ENSAPLG00000006386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006628
103086360 - 103115382
29023