About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103097759_103107684_F


Intron Information:

Intron Rank:
4

Intron Class:
major-like

Intron Phase:
1

Intron Coordinates:
103097759 - 103107684

Intron Length:
9926

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATT|GTGAAGTTA

5'SS Class:
weak_major

3'SS Sequence:
CTGCTTGTAACAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTATAAT

U12 Branch Point Sequence:
GTTCGTATAATT

Flanking Amino Acid:
KRVVEANQLYLVIFFSCVPL

Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
58.4
0.2
1.1
59.8
34.8

Major BPS
70.1
0.5
1.3
72.3
40.4

Major PPT
69.6
0.44
1
64.9
40.1

Minor 5ss
36.8
-1.5
3.5
51.6
46.6

Minor BPS
48.6
-0
2
70.98
40.2

Associated Gene:

Gene:
TMEM241

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

103086360 - 103110680
24321

103086360 - 103115382
29023