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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10313130_10317891_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10313130 - 10317891
Intron Length:
4762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
VIRAHKSITECAVFTWTNLL
Intron Amino Acid Position:
1454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
82.3
0.73
0.9
73.7
40.5
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035133
10312877 - 10455174
142298
ENSAPLT00000002549
10312877 - 10457120
144244