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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103143338_103144916_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103143338 - 103144916
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCATTCACA
Flanking Amino Acid:
RKHEVKHLIDKLEEKFRLNR
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
78.2
36.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
85.4
0.8
0.8
80.4
31.6
Minor 5ss
41.3
-1
3.1
58.4
39.6
Minor BPS
54.7
0.14
2.1
68.02
44.4

Associated Gene:

Gene:
CABLES1
Ensembl Gene ID:
ENSAPLG00000006339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006574
103143197 - 103166631
23435