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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103155314_103156807_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103155314 - 103156807
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGATA
5'SS Class:
major
3'SS Sequence:
GACTTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCATTCTGACTT
Flanking Amino Acid:
EGVELGADGKTVSYTQFLFP
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
37
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.3
0.59
0.8
73.8
36.6
Minor 5ss
29
-2.4
3.4
38.5
46.8
Minor BPS
47.7
-0
1.7
60.49
43.8

Associated Gene:

Gene:
CABLES1
Ensembl Gene ID:
ENSAPLG00000006339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006574
103143197 - 103166631
23435