About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10319801_10320983_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10319801 - 10320983
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTAACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACT
Flanking Amino Acid:
GPLGDSHLGEIWVHSTHNAS
Intron Amino Acid Position:
1355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.2
0.41
0.9
67.1
38.3
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
74.6
0.85
1.2
84.67
36

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035133
10312877 - 10455174
142298
ENSAPLT00000002549
10312877 - 10457120
144244