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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10321956_10338782_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10321956 - 10338782
Intron Length:
16827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGAACC
5'SS Class:
major
3'SS Sequence:
ATGTGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTATTTTTACAT
Flanking Amino Acid:
YVDMRALRHDRVRLVERGSP
Intron Amino Acid Position:
1310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
63.8
38.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.4
0.66
0.9
72.7
41.8
Minor 5ss
28.8
-2.4
2.9
35.8
40.6
Minor BPS
59
0.36
1.7
77.29
39.3

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035133
10312877 - 10455174
142298
ENSAPLT00000002549
10312877 - 10457120
144244