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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103226910_103227989_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103226910 - 103227989
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
ATCATATGAAAA
Flanking Amino Acid:
FVEPYFKSDERKNTVLDFPH
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
66.7
0.41
1
57.8
39
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
44.6
-0.4
1.7
53.89
37.7

Associated Gene:

Gene:
RBBP8
Ensembl Gene ID:
ENSAPLG00000005872
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019156
103220644 - 103255845
35202
ENSAPLT00000006124
103220644 - 103255845
35202