About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103233277_103234005_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103233277 - 103234005
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTTTC
5'SS Class:
major
3'SS Sequence:
TCACTGTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTATTTAATG
Flanking Amino Acid:
SESRNDDNSLGFLDASQNTP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.2
0.5
1
69.4
40.6
Minor 5ss
45
-0.5
2.7
52.3
45
Minor BPS
62.3
0.25
1.5
63.94
38

Associated Gene:

Gene:
RBBP8
Ensembl Gene ID:
ENSAPLG00000005872
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006124
103220644 - 103255845
35202
ENSAPLT00000019156
103220644 - 103255845
35202