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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103240428_103241146_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103240428 - 103241146
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACATTAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TATACATTAATT
Flanking Amino Acid:
QQNLKLITELMNEKNNLQDE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
71
0.47
1
63.6
41.1
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
68.8
0.67
1.6
83.66
36.7

Associated Gene:

Gene:
RBBP8
Ensembl Gene ID:
ENSAPLG00000005872
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006124
103220644 - 103255845
35202
ENSAPLT00000019156
103220644 - 103255845
35202