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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103248852_103253923_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103248852 - 103253923
Intron Length:
5072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
AATTGTATAACA
Flanking Amino Acid:
LKECHDKEVQGLQLKISKLK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
51.9
0.06
2
67.9
38.3

Associated Gene:

Gene:
RBBP8
Ensembl Gene ID:
ENSAPLG00000005872
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006124
103220644 - 103255845
35202
ENSAPLT00000019156
103220644 - 103255845
35202