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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103254141_103254760_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
103254141 - 103254760
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCAAACATAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.2
0.68
0.9
73.9
35.4
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
43.1
-0.4
2
56.67
44.8

Associated Gene:

Gene:
RBBP8
Ensembl Gene ID:
ENSAPLG00000005872
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019156
103220644 - 103255845
35202