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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103278742_103320742_F

Intron Information:

Intron Rank:
126862
Intron Class:
major
Intron Phase:
Intron Coordinates:
103278742 - 103320742
Intron Length:
42001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATGTTC
5'SS Class:
major
3'SS Sequence:
TTCTGGCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
67.1
39.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.6
0.4
1
59.3
41.8
Minor 5ss
41.8
-0.9
3.3
59.7
45
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018347
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029351
103278612 - 103322088
43477