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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103288493_103307152_R

Intron Information:

Intron Rank:
143974
Intron Class:
major
Intron Phase:
Intron Coordinates:
103288493 - 103307152
Intron Length:
18660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.5
0.8
0.8
80.1
31.8
Minor 5ss
43
-0.8
2.6
51.2
45.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024721
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034308
103288103 - 103307321
19219