Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103355203_103356479_F

Intron Information:

Intron Rank:

123988

Intron Class:

major

Intron Phase:

Intron Coordinates:

103355203 - 103356479

Intron Length:

1277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAGGGTGG

5'SS Class:

major

3'SS Sequence:

TTCTTCCTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

CAGATTTGCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.1

52.6

46.7

Major BPS

0.62

1.4

85.7

34.9

Major PPT

81.8

0.72

0.7

81.3

23.8

Minor 5ss

35.2

-1.7

3.5

46.2

Minor BPS

40.5

-0.6

1.7

49.42

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046221

103354276 - 103356636

2361