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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10338845_10347487_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10338845 - 10347487
Intron Length:
8643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTGTTTACA
Flanking Amino Acid:
CRVNLAICLQGTSGPDPTTV
Intron Amino Acid Position:
1290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
50.3
0
2.3
70.34
42.1

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002549
10312877 - 10457120
144244