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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103442749_103450724_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103442749 - 103450724
Intron Length:
7976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTCAGCAAAATC
Flanking Amino Acid:
SPSTQPSASGASSSVMSGPG
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
82.7
0.73
0.7
76.9
25
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
39.4
-0.8
2.1
47.1
42.8

Associated Gene:

Gene:
GATA6
Ensembl Gene ID:
ENSAPLG00000005868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006065
103442581 - 103459507
16927