About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103451022_103452555_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103451022 - 103452555
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGAAATTTAATT
Flanking Amino Acid:
ACGLYMKLHGVPRPLAMKKE
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.6
0.82
0.8
84.9
35.4
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
52.4
0.15
1.5
64.45
39.6

Associated Gene:

Gene:
GATA6
Ensembl Gene ID:
ENSAPLG00000005868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006065
103442581 - 103459507
16927