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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103452682_103455495_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103452682 - 103455495
Intron Length:
2814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTGTTTTTACCT
Flanking Amino Acid:
RPLIKPQKRVPSSRRLGLSC
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.3
0.59
0.9
69.6
36.8
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
61.5
0.44
1.6
75.57
41.7

Associated Gene:

Gene:
GATA6
Ensembl Gene ID:
ENSAPLG00000005868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006065
103442581 - 103459507
16927