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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10348775_10359063_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10348775 - 10359063
Intron Length:
10289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTATCTTTACA
Flanking Amino Acid:
GLGFVLWCLCSVYSGHQSIL
Intron Amino Acid Position:
1176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83
0.74
0.9
76.4
37.6
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
62.2
0.38
1.7
72.69
38.6

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002549
10312877 - 10457120
144244
ENSAPLT00000035133
10312877 - 10455174
142298