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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103551273_103556477_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103551273 - 103556477
Intron Length:
5205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTGTCATTGACT
Flanking Amino Acid:
QQQLQDIKEQTMCPVCLDRL
Intron Amino Acid Position:
961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
76.4
0.59
0.9
69.3
40.7
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
66.6
0.6
1.7
80.28
41.8

Associated Gene:

Gene:
MIB1
Ensembl Gene ID:
ENSAPLG00000005158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005397
103551132 - 103621101
69970