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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103554195_103556477_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103554195 - 103556477
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTACTTAAAA
Flanking Amino Acid:
QQQLQDIKEQQV*
Intron Amino Acid Position:
961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
69.3
0.6
1.6
77.97
38.3

Associated Gene:

Gene:
MIB1
Ensembl Gene ID:
ENSAPLG00000005158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030258
103553897 - 103621101
67205