About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103561087_103562849_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103561087 - 103562849
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTAAAAAAAAA
Flanking Amino Acid:
ALAKCHKEKVSGQVGSRSPS
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79
0.65
0.9
73.7
36.9
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
39.2
-0.8
2.2
57.18
41

Associated Gene:

Gene:
MIB1
Ensembl Gene ID:
ENSAPLG00000005158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030258
103553897 - 103621101
67205
ENSAPLT00000005397
103551132 - 103621101
69970