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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10362174_10362289_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10362174 - 10362289
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
VRTWPPVLDTDDLPKKRPAQ
Intron Amino Acid Position:
1096

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.9
0.58
0.9
71.3
39.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035133
10312877 - 10455174
142298
ENSAPLT00000002549
10312877 - 10457120
144244