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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103631427_103632495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103631427 - 103632495
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTGTGCCTGACT
Flanking Amino Acid:
ACYYLSSIAKKPQLVASNKR
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.4
0.66
0.7
72.9
31.9
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
49.3
0.03
2.2
71.61
45.6

Associated Gene:

Gene:
ABHD3
Ensembl Gene ID:
ENSAPLG00000004876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005043
103630813 - 103651348
20536