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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103632660_103635168_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103632660 - 103635168
Intron Length:
2509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATGTGCCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTCTTGAAAT
Flanking Amino Acid:
ITSRPQVQYRNELIRTADGG
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.1
0.57
0.9
70.5
40.6
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
66.7
0.6
1.5
82.16
39

Associated Gene:

Gene:
ABHD3
Ensembl Gene ID:
ENSAPLG00000004876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005043
103630813 - 103651348
20536