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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103639665_103643574_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103639665 - 103643574
Intron Length:
3910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
PFMAAGVSMGGMLLLNYLGK
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
75.6
36.7
Major BPS
100
1.24
0.5
100
0
Major PPT
84.9
0.79
0.7
80.8
31.2
Minor 5ss
38
-1.4
3.4
47.1
48.3
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
ABHD3
Ensembl Gene ID:
ENSAPLG00000004876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005043
103630813 - 103651348
20536