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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103643749_103644394_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103643749 - 103644394
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
AGTCCTCCAATT
Flanking Amino Acid:
LTTCLQSSISRHRQMLEKLF
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
86.2
0.81
0.6
85.4
21.9
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
47.3
-0.1
1.8
65.99
38.4

Associated Gene:

Gene:
ABHD3
Ensembl Gene ID:
ENSAPLG00000004876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005043
103630813 - 103651348
20536