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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103644693_103651169_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103644693 - 103651169
Intron Length:
6477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCCACCCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AGTACTTAAAGT
Flanking Amino Acid:
SVDDVFSPGHAIPVETAKQN
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
69.1
0.43
0.8
65.3
30.4
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
48.7
-0
2
67.53
43.3

Associated Gene:

Gene:
ABHD3
Ensembl Gene ID:
ENSAPLG00000004876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005043
103630813 - 103651348
20536