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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103667041_103676203_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103667041 - 103676203
Intron Length:
9163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
GKDGDKQLIIDAGQKRFGAI
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
ESCO1
Ensembl Gene ID:
ENSAPLG00000004761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004917
103660745 - 103689921
29177