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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103676336_103683541_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103676336 - 103683541
Intron Length:
7206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
NQFISAVKYVGWKKERILAE
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
79.2
0.72
1
75
40
Major PPT
81.6
0.71
0.9
82
34.8
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
ESCO1
Ensembl Gene ID:
ENSAPLG00000004761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004917
103660745 - 103689921
29177