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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103683632_103686429_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103683632 - 103686429
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATTTTGACA
Flanking Amino Acid:
PDDPKYALKKVEEIREMVDN
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
1
75.7
38.1
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
63.4
0.42
1.3
70
36.5

Associated Gene:

Gene:
ESCO1
Ensembl Gene ID:
ENSAPLG00000004761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004917
103660745 - 103689921
29177