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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103687160_103689773_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103687160 - 103689773
Intron Length:
2614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TTCTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTCCAAACA
Flanking Amino Acid:
KIASRMIECLRSNFIYGSYL
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74
0.54
0.9
70.5
34
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
53.8
0.12
2
71.21
41.3

Associated Gene:

Gene:
ESCO1
Ensembl Gene ID:
ENSAPLG00000004761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004917
103660745 - 103689921
29177