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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10370673_10371449_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10370673 - 10371449
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGCATTTAACA
Flanking Amino Acid:
NLPKPRQKQPEIGPASVMVG
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.9
0.56
0.9
67.2
43.5
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
65.8
0.49
1.5
73.8
37.7

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002549
10312877 - 10457120
144244
ENSAPLT00000035133
10312877 - 10455174
142298