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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103714900_103716492_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103714900 - 103716492
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCATTCTTATTT
Flanking Amino Acid:
VHDNAHVDLTSAISSSLSHG
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.8
0.81
0.8
80.8
31.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
57.8
0.32
1.6
68.8
42.5

Associated Gene:

Gene:
GREB1L
Ensembl Gene ID:
ENSAPLG00000004077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038209
103693523 - 103816292
122770
ENSAPLT00000004229
103693523 - 103816292
122770