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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103718739_103721183_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
103718739 - 103721183
Intron Length:
2445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACGCACACTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAAAC
Flanking Amino Acid:
AIAMVSTQEPDLDVDTFQIY
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
56
0.14
0.9
44.8
36.7
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
56.7
0.19
1.6
67.06
38.8

Associated Gene:

Gene:
GREB1L
Ensembl Gene ID:
ENSAPLG00000004077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038209
103693523 - 103816292
122770
ENSAPLT00000004229
103693523 - 103816292
122770