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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103721319_103721867_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103721319 - 103721867
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATTCTTAACT
Flanking Amino Acid:
LASHFKNTSLGDDLDKLLEK
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
63.1
0.3
1
57
42.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
83.3
1.12
1
90.03
33.3

Associated Gene:

Gene:
GREB1L
Ensembl Gene ID:
ENSAPLG00000004077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038209
103693523 - 103816292
122770
ENSAPLT00000004229
103693523 - 103816292
122770