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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103729102_103730798_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103729102 - 103730798
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
VPAIRPSTRTEPLLSVPVPQ
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.8
0.78
0.7
80.1
31.6
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
GREB1L
Ensembl Gene ID:
ENSAPLG00000004077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004229
103693523 - 103816292
122770
ENSAPLT00000038209
103693523 - 103816292
122770