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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103730919_103731256_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103730919 - 103731256
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
PIPGCAAGDQASMSSSGPPK
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
GREB1L
Ensembl Gene ID:
ENSAPLG00000004077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038209
103693523 - 103816292
122770
ENSAPLT00000004229
103693523 - 103816292
122770