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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103731395_103733210_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103731395 - 103733210
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCACTT
5'SS Class:
major
3'SS Sequence:
TTATTATACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTATACT
Flanking Amino Acid:
VQLVGKTFAAAPLSLRATDV
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
66.4
45.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.8
0.58
0.9
74.6
39.1
Minor 5ss
42
-0.9
3.5
65.1
46.1
Minor BPS
51.9
0.14
2.2
80.79
41

Associated Gene:

Gene:
GREB1L
Ensembl Gene ID:
ENSAPLG00000004077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004229
103693523 - 103816292
122770
ENSAPLT00000038209
103693523 - 103816292
122770