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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10386116_10386232_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10386116 - 10386232
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCATTCTTATTG
Flanking Amino Acid:
SWIQKVCQYKAKVACVKSRD
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.7
0.76
0.8
78.2
34.2
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
49.9
-0.1
1.7
50.9
44.2

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035133
10312877 - 10455174
142298
ENSAPLT00000002549
10312877 - 10457120
144244