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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103888856_103891619_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103888856 - 103891619
Intron Length:
2764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAAG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TTACTCTTACAC
Flanking Amino Acid:
DAIHSMGFIHRDVKPDNMLL
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
70.1
35.7
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
26.7
-2.7
2.8
30.4
43
Minor BPS
53.5
0.09
1.7
65.75
39.4

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030