About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103891705_103893543_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103891705 - 103893543
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACAAT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCCTTCTCT
Flanking Amino Acid:
DFGTCMKMNKEGMVRCDTAV
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.2
40.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.8
0.78
0.7
80.7
24.5
Minor 5ss
39
-1.2
3.3
56.4
48
Minor BPS
50.3
0.09
3.6
91.83
37.8

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002836
103854320 - 103938349
84030
ENSAPLT00000021317
103854320 - 103938349
84030